PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43201.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-YC
Protein Properties Length: 228aa    MW: 25258.4 Da    PI: 4.8893
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43201.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1794.3e-56551581101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fwe+q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtdifdflvdiv
  KFK43201.1  55 QLQVFWENQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 153
                 89******99999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr++l
  KFK43201.1 154 PREDL 158
                 **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.52E-3249149IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.7E-3869141IPR009072Histone-fold
PfamPF008085.7E-2277140IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDQQEHGQSG YGSNPYQTNP MTTTVAGSVG AAAPPGQLAF HQIHQQQQQQ QLAQQLQVFW  60
ENQFKEIEKT TDFKNHSLPL ARIKKIMKAD EDVRMISAEA PVVFARACEM FILELTLRSW  120
NHTEENKRRT LQKNDIAAAV TRTDIFDFLV DIVPREDLRD EVLGSIPRGA VPEAAAAGYP  180
YGYLPAGTPP LGNPGMVMGN PGGAYPPNPY MGQPMWQQPG PDQPDSEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C5e-415615519119HapE
4g92_C5e-415615519119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3168820.0AK316882.2 Arabidopsis thaliana AT1G08970 mRNA, complete cds, clone: RAFL14-04-L24.
GenBankAY0858600.0AY085860.1 Arabidopsis thaliana clone 1911 mRNA, complete sequence.
GenBankAY1269970.0AY126997.1 Arabidopsis thaliana At1g08970/F7G19_16 mRNA, complete cds.
GenBankAY1438270.0AY143827.1 Arabidopsis thaliana At1g08970/F7G19_16 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7G190.0AC000106.1 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417626.11e-144hypothetical protein EUTSA_v10008649mg
SwissprotQ8L4B21e-136NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A087HM491e-171A0A087HM49_ARAAL; Nuclear transcription factor y subunit c-9
STRINGfgenesh2_kg.1__929__AT1G08970.21e-139(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-84nuclear factor Y, subunit C9